Alignment of alleles: Channel catfish (Ictalurus punctatus) IGHV11S2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   I   S   L   T   S   S   P   A       E   V   K   P   P   G   A   S   V   K
  AY238371,IGHV11S2*01          GGC ATC AGT CTG ACC TCG TCT CCT GCT ... GAG GTT AAA CCT CCC GGA GCC TCA GTG AAG

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   S   C   Q   I   S   G   Y   V   L   T   S   Y   G                   T   G
  AY238371,IGHV11S2*01          TTG TCC TGT CAG ATT TCT GGC TAT GTC CTC ACT AGC TAC GGC ... ... ... ... ACA GGC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   P   P   G   K   G   L   E   W   I   G   I   I   W   G   G   G
  AY238371,IGHV11S2*01          TGG ATC AGA CAG CCT CCA GGA AAA GGC TTG GAG TGG ATC GGG ATC ATA TGG GGT GGT GGA

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S   I               D   S   G   A   S   F   K       T   R   F   S   I   S   R
  AY238371,IGHV11S2*01          AGC ATA ... ... ... GAT TCT GGA GCC TCC TTT AAA ... ACT CGA TTC AGC ATC TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   T   T   K   N   V   L   Y   L   D   I   S   G   L   V   P   E   D   T   A
  AY238371,IGHV11S2*01          GAC ACG ACC AAG AAT GTG CTT TAC TTA GAT ATT AGC GGC CTG GTG CCA GAA GAC ACG GCT

                                                _CDR3-IMGT__
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   K
  AY238371,IGHV11S2*01          GTT TAT TAT TGT GCA AAA #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/11/2003
Author: Nathalie Bosc